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Peer-Reviewed Journal Publications (Matthews' advisees denoted by *)

Peer-Reviewed Conference Publications (Matthews' advisees denoted by *)

Technical Reports (Matthews' advisees denoted by *)

  • St. Amour L*, Ulrich F*, Kellas A*, Molnar A*, and Matthews SJ. PAVE: Write-print Creation with MapReduce. DTIC Technical Report, Accession number AD1005367. Army Research Labs. [LINK] [PDF]

Peer-Reviewed Posters and Presentations (Matthews' advisees denoted by *)

  • Curtin BH*, David RH*, Dunham ED*, Johnson CD*, Shyamkumar N*, Babbitt TA, and Matthews SJ. "Designing a raspberry pi sensor network for remote observation of wildlife". Proceedings of the 6th Annual Symposium on Hot Topics in the Science of Security (HotSoS'19), pp. 17:1–17:2, April 2019. Poster
  • Andrews D*, Behn J*, Jaksha D*, Seo J*, Schneider M*, Yoon J*, Matthews SJ, Agrawal RK, and Mentis AS. "Exploring rnns for analyzing zeek http data". Proceedings of the 6th Annual Symposium on Hot Topics in the Science of Security (HotSoS'19), pp. 18:1–18:2, April 2019. Poster
  • Baciu-Ureche O-G*, Sleeman C*, Scott K* , Moody W, and Matthews SJ, "The adventures of scriptkitty: Teaching middle school students cyber awareness with comics on the raspberry pi". In Proceedings of the 50th ACM Technical Symposium on Computer Science Education (SIGCSE ’19), pp. 1294–1294. Presented as part of the ACM Student Research Competition (SIGCSE'19)
  • Shopov N*, Jeong M*, Rude E*, Neseralla B*, Hutchison S*, Mentis A, and Matthews SJ, "Investigating tensorflow for airport facial identification: Poster", in Proceedings of the 5th Annual Symposium and Bootcamp on Hot Topics in the Science of Security (HoTSoS'18), pp. 23-23, April 2018. Poster
  • Drakontaidis S*, Stanchi M*, Glazer G*, Davis A*, Stark M*, Clay C*, Hussey J, Barry N, St-Leger A, and Matthews SJ, "Integrating historical and real-time anomaly detection to create a more resilient smart grid architecture: Poster," in Proceedings of the 5th Annual Symposium and Bootcamp on Hot Topics in the Science of Security (HoTSoS'18), pp. 22-22, April 2018.
  • Alejos A*, Ball M*, Eckert C*, Ma M*, Ward H*, Hanlon P, and Matthews SJ, "Exploring the raspberry pi for data summarization in wireless sensor networks: Poster", in Proceedings of the 5th Annual Symposium and Bootcamp on Hot Topics in the Science of Security (HoTSoS'18), pp. 18-18, April 2018.
  • Brownfield D* , Deaton S*, Kosta L*, Zhu Z*, Matthews SJ. "Leveraging Apache Spark for Real-Time Regex Matching on Bro Log Data". Consortium for Computing Sciences in Colleges - Northeastern Region (CCSCNE’17) Undergraduate Research Competition. First Prize. April 2017. Poster
  • Lee J*, Lacey A*, Panto Z*, Jenkins M*, Matthews SJ. "A k-means approach for attributing the authorship of anonymous e-mail". National Conference on Undergraduate Research (NCUR 2016), April 2016. Poster.
  • Horras S*, Gerber R, Matthews SJ. "Investigating Job Configuration Efficiency on HPC Resources at NERSC". National Conference on Undergraduate Research (NCUR 2015), April 2015. Poster.
  • Kellas A*, Molnar A*, St. Amour L*, Ulrich* F, and Matthews SJ. "Parallel Author Verification of Email". In Proceedings of the 46th ACM Technical Symposium on Computer Science Education (SIGCSE ’15). Presented as part of the ACM Student Research Competition, Kansas City, MO, March 6-8, 2015. Poster.
  • Jones L*, Betros R*, Tyson B*, Rollings N*, Figueroa-Cecco J*, and Matthews SJ. "Using MapReduce to Compare Large Collections of Evolutionary Trees". 2014 Grace Hopper Conference, October 2014. Poster.
  • Hannigan, J*, Matthews SJ, Wickiser JK, and Shakarian P. "Leveraging Host Protein Network Topology to Identify Cancer Causing Pathogens". 2014 ACM Richard Tapia Conference, February 2014. Best Poster. Also awarded Best Poster at the Network Science Poster Competition, Projects Day, United States Military Academy, May 2013. Poster.
  • Matthews SJ and Williams TL. "An efficient and extensible approach for compressing phylogenetic trees". Eighth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society (MCBIOS’11). 1st Place. Also presented this talk at Evolution’11. 2011. Oral Presentation
  • Matthews SJ, Sul S, and Williams TL. "Effective phylogenetic compression with TreeZip", Informatics for Phylogenetics, Evolution, and Biodiversity (iEvo- Bio’10). Available from Nature Precedings: (http://hdl.handle.net/10101/npre.2010.4613.1). 2010. Lightning Talk
  • Matthews SJ, Sul S, and Williams TL. "TreeZip: A New Algorithm for Compressing Large Collections of Evolutionary Trees". In Proceedings of the 2010 Data Compression Conference (DCC’10). IEEE Computer Society, Washington, DC, USA, 544. 2010. Poster paper.
  • Matthews SJand Williams TL. "Using MapReduce for evolutionary trees on multicore platforms". 2009 Richard Tapia Conference. Presented as part of the ACM Student Research Competition (Tapia’09), April 2009. Poster.

Dissertation and Thesis

  • Matthews, SJ. "Efficient Algorithms for Comparing, Sharing, and Storing Large Collections of Evolutionary Trees". Ph.D. Dissertation. Texas A&M University, May 2012. Advisor: Tiffani L. Williams.[LINK]
  • Matthews, SJ. "Visualizing pathways: An exploration of the protein unfolding process". Masters Thesis. Rensselaer Polytechnic Institute, May 2008. Advisor: Chris Bystroff. [LINK].